Package: handyFunctions 0.1.0

handyFunctions: Useful Functions for Handfully Manipulating and Analyzing Data with Data.frame Format

Some useful functions for simply manipulating and analyzing data with data.frame format. It mainly includes the following sections: ReformatDataframe (reformat dataframe with the modifiers), InteractDataframe, and Post-VCF (for downstream analysis for data generated from vcftools (Petr Danecek, 2011) (<http://dx.doi.org/10.1093/bioinformatics/btr330>) or plink (Chang CC, 2015) <10.1186/s13742-015-0047-8>.

Authors:Hongfei Liu

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handyFunctions.pdf |handyFunctions.html✨
handyFunctions/json (API)
NEWS

# Install 'handyFunctions' in R:

install.packages('handyFunctions', repos = c('https://luffylouis.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/luffylouis/handyfunctions/issues

Datasets:

SNV_1MB_density_data - The SNPV number within 1Mb bins at chromosome levels generated from transcriptome dataset of two dog populations (including wild wolf and domesticated dogs).
grade - Grade records of virtual persons in high school
people - Basic information of virtual persons

On CRAN:

3.28 score 2 stars 19 scripts 161 downloads 11 exports 30 dependencies

Last updated 2 years agofrom:a1b427e48a. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 27 2024
R-4.5-win	OK	Oct 27 2024
R-4.5-linux	OK	Oct 27 2024
R-4.4-win	OK	Oct 27 2024
R-4.4-mac	OK	Oct 27 2024
R-4.3-win	OK	Oct 27 2024
R-4.3-mac	OK	Oct 27 2024

Exports:checkCols checkDtype matchIndex mergeCustom modifyColNames modifyColTypes modifyRowNames queryingInfo ShowSNPDensityPlot splitCol unifyDataframe

Dependencies:cli colorspace fansi farver ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales stringi stringr tibble utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
check the validation and return index of cols given from input in rawDataFrame	checkCols
Return suggested dtype of vector input	checkDtype
Grade records of virtual persons in high school	grade
Return the index of source vector matched with query vector	matchIndex
merge two data.frame based on xcol and ycol	mergeCustom
Return reformatted data.frame with standard col names	modifyColNames
Return suggested appropriate dtypes for each column in rawDataFrame	modifyColTypes
Return reformatted data.frame with standard row names	modifyRowNames
Basic information of virtual persons	people
return index of x data.frame with the given vector/list or ycol in data.frame (if set the accurate match or not)	queryingInfo
Function of showing SNP density at chromosome level	ShowSNPDensityPlot
The SNPV number within 1Mb bins at chromosome levels generated from transcriptome dataset of two dog populations (including wild wolf and domesticated dogs).	SNV_1MB_density_data
Return specific-indexed vector according to given delimitator/separator by splitting one col in data.frame	splitCol
Reformat dataframe with the all modifiers simultaneously (colNames, rowNames and dtypes)	unifyDataframe